ゲノム配列が決定された古細菌の一覧

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ゲノム配列が決定された古細菌の一覧

本項目はゲノムの全塩基配列の解読が終了している古細菌の一覧である。正式発表されていないを含む。

2010年4月現在、80株以上の古細菌の配列が決定されている。ゲノムサイズが小さいことや発見された種自体が少ないことなどもあって真核生物真正細菌に比べ進んでいる。2009年新たに発表されたアキディロブス目を除き、全てのに配列が決定された種が存在する。

DNA
分子数
塩基対数 遺伝子 大分類 備考
Aciduliprofundum boonei T469 1 1,486,778 1,544 Euryarchaeota
Aeropyrum pernix K1 1 1,669,696 1,700 Crenarchaeota
Archaeoglobus fulgidus DSM 4304 1 2,178,400 2,407 Euryarchaeota
Archaeoglobus profundus DSM 5631 2 1,563,423 1,823 Euryarchaeota
Caldivirga maquilingensis IC-167 1 2,077,567 1,963 Crenarchaeota
Cenarchaeum symbiosum A 1 2,045,086 2,017 Thaumarchaeota [1]
Desulfurococcus kamchatkensis 1221n 1 1,365,223 1,471 Crenarchaeota
Ferroglobus placidus DSM 10642 1 2,196,266 2,480 Euryarchaeota
Haloarcula marismortui ATCC43049 9 4,274,642 4,240 Euryarchaeota
Halobacterium salinarum NRC-1 3 2,571,010 2,622 Euryarchaeota
Halobacterium salinarum R1 5 2,668,776 2,749 Euryarchaeota
Haloferax volcanii DS2 5 4,012,900 4,209 Euryarchaeota
Halogeometricum borinquense PR3 6 3,944,467 4,059 Euryarchaeota
Halomicrobium mukohataei DSM 12286 2 3,332,349 3,349 Euryarchaeota
Haloquadratum walsbyi DSM 16790 2 3,179,361 2,646 Euryarchaeota
Halorhabdus utahensis DSM 12940 1 3,116,795 2,998 Euryarchaeota
Halorubrum lacusprofundi ATCC 49239 3 3,692,576 3,560 Euryarchaeota
Haloterrigena turkmenica DSM 5511 7 5,440,782 5,113 Euryarchaeota
Hyperthermus butylicus DSM 5456 1 1,667,163 1,602 Crenarchaeota
Ignicoccus hospitalis KIN4/I 1 1,297,538 1,434 Crenarchaeota 独立生物として最小
Korarchaeum cryptofilum OPF8 1 1,590,757 1,602 Korarchaeota
Metallosphaera sedula DSM 5348 1 2,191,517 2,256 Crenarchaeota
Methanobacterium thermoautotrophicum delta-H 1 1,751,377 1,873 Euryarchaeota
Methanobrevibacter ruminantium M1 1 2,937,203 2,217 Euryarchaeota
Methanobrevibacter smithii ATCC 35061 1 1,853,160 1,793 Euryarchaeota
Methanocaldococcus fervens AG86 2 1,507,251 1581 Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 3 1,739,927 1,786 Euryarchaeota 最初に配列が決定された古細菌
Methanocaldococcus sp. FS406-22 2 1,773,136 1,816 Euryarchaeota
Methanocaldococcus vulcanius M7 3 1,761,737 1,742 Euryarchaeota
Methanocella paludicola SANAE 1 2,957,635 3,004 Euryarchaeota
Methanocella sp. RC-I 1 3,179,916 3,085 Euryarchaeota
Methanococcoides burtonii DSM 6242 1 2,575,032 2,273 Euryarchaeota
Methanococcus aeolicus Nankai-3 1 1,569,500 1,490 Euryarchaeota
Methanococcus maripaludis S2 1 1,661,137 1,722 Euryarchaeota
Methanococcus maripaludis C5 2 1,789,046 1,822 Euryarchaeota
Methanococcus maripaludis C6 1 1,744,193 1,826 Euryarchaeota
Methanococcus maripaludis C7 1 1,772,694 1,788 Euryarchaeota
Methanococcus sp. FS406-22 2 1,773,136 1,819 Euryarchaeota
Methanococcus vannielii SB 1 1,720,048 1,678 Euryarchaeota
Methanocorpusculum labreanum Z 1 1,804,962 1,739 Euryarchaeota
Methanoculleus marisnigri JR1 1 2,478,101 2,489 Euryarchaeota
Methanohalophilus mahii DSM 5219 1 2,012,424 1,987 Euryarchaeota
Methanopyrus kandleri AV19 1 1,694,969 1,687 Euryarchaeota
Methanosaeta thermophila PT 1 1,879,471 1,696 Euryarchaeota
Methanosarcina acetivorans C2A 1 5,751,492 4,540 Euryarchaeota
Methanosarcina barkeri fusaro 2 4,873,766 3,624 Euryarchaeota
Methanosarcina mazei Goe1 1 4,096,345 3,370 Euryarchaeota
Methanosphaera stadtmanae DSM 3091 1 1,767,403 1,534 Euryarchaeota
Methanosphaerula palustris E1-9c 1 2,922,917 2,655 Euryarchaeota
Methanospirillum hungatei JF-1 1 3,544,738 3,139 Euryarchaeota
Methanoregula boonei 6A8 1 2,542,943 2,450 Euryarchaeota
Nanoarchaeum equitans Kin4-M 1 490,885 536 Nanoarchaeota Ignicoccus hospitalisに依存
Natronomonas pharaonis DSM 2160 3 2,749,696 2,822 Euryarchaeota
Natrialba magadii ATCC 43099 4 4,443,643 3,993 Euryarchaeota
Nitrosopumilus maritimus SCM1 1 1,645,259 1,795 Thaumarchaeota
Picrophilus torridus DSM 9790 1 1,545,895 1,535 Euryarchaeota
Pyrobaculum aerophilum IM2 1 2,222,430 2,605 Crenarchaeota
Pyrobaculum arsenaticum DSM 13514 1 2,121,076 2,299 Crenarchaeota
Pyrobaculum calidifontis JCM 11548 1 2,009,313 2,149 Crenarchaeota
Pyrobaculum islandicum DSM 4184 1 1,826,402 1,978 Crenarchaeota
Pyrococcus abyssi GE5 2 1,768,562 1,898 Euryarchaeota
Pyrococcus furiosus DSM 3638 1 1,908,256 2,125 Euryarchaeota
Pyrococcus horikoshii OT3 1 1,738,505 1,955 Euryarchaeota
Staphylothermus marinus F1 1 1,570,485 1,570 Crenarchaeota
Sulfolobus acidocaldarius DSM 639 1 2,225,959 2,223 Crenarchaeota
Sulfolobus islandicus L.S.2.15 1 2,736,272 2,737 Crenarchaeota
Sulfolobus islandicus M.14.25 1 2,608,832 2,608 Crenarchaeota
Sulfolobus islandicus M.16.27 1 2,692,402 2,656 Crenarchaeota
Sulfolobus islandicus M.16.4 1 2,586,647 2,735 Crenarchaeota
Sulfolobus islandicus Y.G.57.14 1 2,702,058 2,903 Crenarchaeota
Sulfolobus islandicus Y.N.15.51 2 2,854,410 2,900 Crenarchaeota
Sulfolobus islandicus L.D.8.5 2 2,748,647 2,948 Crenarchaeota
Sulfolobus solfataricus P2 1 2,992,245 2,977 Crenarchaeota
Sulfolobus tokodaii strain7 1 2,694,756 2,825 Crenarchaeota
Thermococcus gammatolerans EJ3 1 2,045,438 2,156 Euryarchaeota
Thermococcus kodakaraensis KOD1 1 2,088,737 2,306 Euryarchaeota
Thermococcus onnurineus NA1 1 1,847,607 1,975 Euryarchaeota
Thermococcus sibiricus MM 739 1 1,845,800 2,035 Euryarchaeota
Thermofilum pendens Hrk 5 2 1,813,393 1,876 Crenarchaeota
Thermoplasma acidophilum DSM 1728 1 1,564,906 1,482 Euryarchaeota
Thermoplasma volcanium GSS1 1 1,584,804 1,499 Euryarchaeota
Thermoproteus neutrophilus V24Sta 1 1,769,823 1,966 Crenarchaeota
  • Methanoから始まるものは全てメタン菌、Hal及びNatrで始まるものは高度好塩菌、Cenarchaeum及びNitrosopumilusは海洋性、それ以外は全て好熱菌である。

脚注[編集]

  1. ^ Hallam S.J., Konstantinidis K.T., Putnam N., Schleper C., Watanabe Y., Sugahara J., Preston C., de la Torre J., Richardson P.M., DeLong E.F. (2006). “Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum”. Proc. Natl. Acad. Sci. U.S.A. 103 (48): 18296–18301. PMID 17114289. 

参考サイト[編集]